plotSlimSmear: plotSlimSmear

In charles-plessy/smallCAGEqc: ad-hoc QC functions for shallow-sequenced test CAGE libraries

Description

Slimmer plots with a bit of data loss

Usage

plotSlimSmear(COMP, MAIN, ROUND = 2, PCH = 19, CEX = 1)

Arguments

COMP	A DGELRT object from edgeR.
MAIN	The title of the plot.
ROUND	The decimal for the rounding.
PCH	The pch arguments passed to the points function
CEX	The cex arguments passed to the points function Significantly over- and under-represented items are plotted in red and blue respectively. Using this function creates data loss. Try rounding at different decimals and pick one that do not change the visual appearance of the plot significantly.

Details

To reduce the size of SVG or PDF plots, this function rounds the data and remove the duplicate points at the same coordinates.

See Also

plotSmear

Examples

## Not run: 
plotSlimSmear(obj.comp, 'Here is the title')

## End(Not run)

charles-plessy/smallCAGEqc documentation built on May 13, 2019, 3:31 p.m.