R/nanoCAGE2017barcodes.R

In charles-plessy/smallCAGEqc: ad-hoc QC functions for shallow-sequenced test CAGE libraries

#' 96 hexameric barcode sequences for sample indexing
#'
#' Sequence of the 96 barcodes used in Poulain \emph{et al.}, 2017. NanoCAGE
#' libraries can index samples by inserting barcodes in the template-switching
#' oligonucleotide.  A list of 96 barcodes, was published in Poulain \emph{et
#' al.}, 2017.  The barcodes were selected to avoid palindromes, polynucleotide
#' tracts, and sequence similarity.
#' 
#' @format A data frame with one column named \code{barcodes}.
#'
#' @author Jean-Étienne Morlighem, Charles Plessy
#'
#' @references Poulain S, Kato S, Arnaud O, Morlighem JÉ, Suzuki M, Plessy C,
#'   Harbers M. NanoCAGE: A Method for the Analysis of Coding and Noncoding
#'   5'-Capped Transcriptomes. Methods Mol Biol. 2017 1543:57-109

"nanoCAGE2017barcodes"