plot_variant: Function to plot variant metrics

In chenweng1991/scMitoTracing: R package for Regulatory multi-omics with Deep Mitochondrial mutation profiling

Function to plot variant metrics

Description

This function allows you to plot the mito mutation metrics For each category(stringency), p1: Variant allele frequency(VAF); p2: Heteroplasmy histogram p3: CellN(Number of caells that carry the variants) VS maxcts( The number of variant counts in the highest cell) p4: Histogram to show the distribution of the number of variant per cell

Usage

plot_variant(ob, p4xlim = 50, QualifyCellCut = 10)

Arguments

ob	The redeemR object
p4xlim	the p4 xlim(number of variant per cell), default is 50
QualifyCellCut	median coverage for qualified cells, default is 10

Value

no returns, directly plot

chenweng1991/scMitoTracing documentation built on July 2, 2024, 8:41 p.m.