redeemR.read.multiple.trim: Function to read in multiple runs of redeemV outputs with...

In chenweng1991/scMitoTracing: R package for Regulatory multi-omics with Deep Mitochondrial mutation profiling

Function to read in multiple runs of redeemV outputs with edge trimming, default is trimming 5bp

Description

This function allows you to read raw data from multiple XX/final folder, the output from redeemV It process the data same way as CW_mgatk.read but need to specify one threadhold(thr)

Usage

redeemR.read.multiple.trim(paths, names, suffix, edge_trim = 5)

Arguments

paths	a vector of multiple path strings The XX/final folder, the output from mitoV
names	The names for the multiple input, same order with folder
suffix	The suffix for the multiple input, which is added at the end of cell name, separated by "."
edge_trim	how many bp to be trimmed, default is 5,

Value

VariantsGTSummary combined VariantsGTSummary

chenweng1991/scMitoTracing documentation built on June 9, 2025, 5:48 a.m.