impute.missing: Fill in missing values in SnpMatrix object

In chr1swallace/snpBMA: BMA exploration of multi-SNP models in genetic association testing

Description

Uses snpStats' snp.imputation function

Usage

  impute.missing(X, bp = 1:ncol(X), strata = NULL,
    numeric = FALSE, ...)

Arguments

X	SnpMatrix object
bp	optional vector of base pair positions, length == number of SNPs
strata	optional vector, length == number of samples, as.factor(strata) defines distinct strata of samples, eg by geography
numeric	default FALSE
...	arguments passed on to impute.snps

Value

matrix, either numeric (if numeric=TRUE) or SnpMatrix (if numeric=FALSE)

Author(s)

Chris Wallace

chr1swallace/snpBMA documentation built on May 13, 2019, 6:19 p.m.