index.groups: index.groups

In chr1swallace/snpBMA: BMA exploration of multi-SNP models in genetic association testing

Description

create groups of SNPs with LD > r2.threshold with index.snps

Usage

  index.groups(X, index.snps, r2.threshold = 0.9,
    snps = NULL, samples = NULL)

Arguments

X	SnpMatrix object
index.snps	snps to index groups
r2.threshold	threshold above which snps should be grouped with an index snp
snps	SNP subset to be used (columns of X)
samples	sample subset to be used (rows of X)

Value

list of character vectors, each vector being a single group and the names of the list being the index snps

Author(s)

Chris Wallace

chr1swallace/snpBMA documentation built on May 13, 2019, 6:19 p.m.