mcomp.detail: mcomp.detail

In chr1swallace/snpBMA: BMA exploration of multi-SNP models in genetic association testing

Description

mcomp.detail, internal function

Usage

  mcomp.detail(m.parent, m.child, bf.parent, bf.child,
    ntarget, n.child, prior.parents, prior.children, what,
    pp.fold = 10, quiet = FALSE)

Arguments

m.parent	parent model matrix
m.child	child model matrix
bf.parent	BF matrix for parent models
bf.child	BF matrix for child models
ntarget	number of SNPs in parent models
n.child	number of SNPs in child models
prior.parents	prior for parent models
prior.children	prior for child models,
what	"drop" or "keep"
pp.fold	the minimum posterior odds for a child model to be returned
quiet	default FALSE, if TRUE, supress progress messages.

Details

The prior odds are used, together with Bayes Factors, to determine posterior odds on which basis a subset of child models are returned

Value

object of class dropModels defining models to drop (if what=="drop"), or an index vector of which rows of supplied m.child should be kept or kept (if what=="keep")

Author(s)

Chris Wallace

chr1swallace/snpBMA documentation built on May 13, 2019, 6:19 p.m.