r2.groups: create groups of SNPs with LD > r2.threshold with index.snps

In chr1swallace/snpBMA: BMA exploration of multi-SNP models in genetic association testing

Description

create groups of SNPs with LD > r2.threshold with index.snps

Usage

  r2.groups(X, r2.threshold = 0.9, snps = NULL,
    samples = NULL, do.plot = FALSE)

Arguments

X	SnpMatrix
r2.threshold	r2 threshold above which SNPs should be tagged, default 0.9
snps	optional, if present, limit to these SNPs
samples	optional, if present, limit to these samples
do.plot	default FALSE, if TRUE plot the hclust object used for the clustering

chr1swallace/snpBMA documentation built on May 13, 2019, 6:19 p.m.