make.data: make.data

In chr1swallace/snpBMA: BMA exploration of multi-SNP models in genetic association testing

Description

Create an snpBMAdata object given a matrix of genotypes and a vector of phenotypes

Usage

  make.data(X, Y, tags, family = "binomial", strata = NULL,
    covar = NULL, data = NULL)

Arguments

X	matrix of explanatory variables, either a SnpMatrix object, or a numeric matrix with 0, 1, 2 indicating copies of a counted allele at each SNP. Rows are samples, columns are SNPs.
Y	response
tags	a named character vector created by the tag() function
family	character string, "binomial" or "gaussian", passed to glib
strata	optional, if present, levels of factor(strata) define distinct groups of samples which should be analysed separately

Value

a list with entries X and Y

Author(s)

Chris Wallace

chr1swallace/snpBMA documentation built on May 13, 2019, 6:19 p.m.