tag: tag
In chr1swallace/snpBMA: BMA exploration of multi-SNP models in genetic association testing
Description
Usage
Arguments
Details
Value
Author(s)
Description
Derive tag SNPs for a SnpMatrix object using heirarchical
clustering
Usage
1
Arguments
X
SnpMatrix object
tag.threshold
threshold to cut tree, default=0.99
snps
colnames of the SnpMatrix object to be used
samples
optional, subset of samples to use
Details
Uses complete linkage and the hclust
function to define clusters, then cuts the tree at
1-tag.threshold
Value
character vector, names are snps, values are the
tag for each SNP
Author(s)
Chris Wallace
chr1swallace/snpBMA documentation built on May 13, 2019, 6:19 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Details Value Author(s)
Description
Derive tag SNPs for a SnpMatrix object using heirarchical clustering
Usage
1 |
Arguments
X |
SnpMatrix object |
tag.threshold |
threshold to cut tree, default=0.99 |
snps |
colnames of the SnpMatrix object to be used |
samples |
optional, subset of samples to use |
Details
Uses complete linkage and the hclust
function to define clusters, then cuts the tree at
1-tag.threshold
Value
character vector, names are snps, values are the
tag for each SNP
Author(s)
Chris Wallace
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.