admixture: ADMIXTURE

In cmcouto-silva/gt: Facilities for essential tasks in R

Description

Run ADMIXTURE Software inside R. It must be installed on the system path.

Usage

admixture(file, K, se = F, j, plot = F, ...)

Arguments

file	Character vector. File name (.ped, .bed, or .geno). Note that the corresponding SNP and Pedigree files must be alocated in the same folder. Please see the Admixture documentation.
K	Integer scalar. Number of ancestral populations to be computed.
...	Scalar character. A single string with all desired parameters (e.g. -B, -C, –cs, -s, -se, –supervised, etc).

Value

Admixture output files (.Q and .P).

Author(s)

Cainã Max Couto-Silva.

cmcouto-silva/gt documentation built on June 6, 2021, 7:14 p.m.