remove_monomorphic_alleles: Remove Monomorphic Alleles
In cmcouto-silva/gt: Facilities for essential tasks in R
Description
Usage
Arguments
Value
Author(s)
Examples
View source: R/remove_monomorphic_alleles.R
Description
Alleles equals to 0 or equals among themselves (Ref vs Alt) will be removed from dataset.
This functions accepts Plink and Shapeit files, altough vcf will be included soon. For Plink format,
Plink Software must be installed on system path (it will be check inside the function).
Usage
1
remove_monomorphic_alleles(file, output)
Arguments
file
Character. Name of file (.bim or .haps)
output
Character. Desired name for output. If missing, the original file will be overwritten.
Value
Dataset without monomorphic alleles.
Author(s)
Cainã Max Couto da Silva
Examples
1
2
3
4
5
## Not run:
bim_file <- "myfile.bim"
remove_monomorphic_alleles(file = bim_file)
## End(Not run)
cmcouto-silva/gt documentation built on June 6, 2021, 7:14 p.m.
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Description Usage Arguments Value Author(s) Examples
View source: R/remove_monomorphic_alleles.R
Description
Alleles equals to 0 or equals among themselves (Ref vs Alt) will be removed from dataset. This functions accepts Plink and Shapeit files, altough vcf will be included soon. For Plink format, Plink Software must be installed on system path (it will be check inside the function).
Usage
1 | remove_monomorphic_alleles(file, output)
|
Arguments
file |
Character. Name of file (.bim or .haps) |
output |
Character. Desired name for output. If missing, the original file will be overwritten. |
Value
Dataset without monomorphic alleles.
Author(s)
Cainã Max Couto da Silva
Examples
1 2 3 4 5 | ## Not run:
bim_file <- "myfile.bim"
remove_monomorphic_alleles(file = bim_file)
## End(Not run)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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