eigensoft2plink: Conversion from EIGEN to Plink format

In cmcouto-silva/gt: Facilities for essential tasks in R

Description

Conversion from EIGEN to Plink format

Usage

eigensoft2plink(input, out, mode = 1L, ...)

Arguments

input	Scalar character. Name of the file in EIGEN format without extensions (i.e. eigenstratgeno, .snp, .ind)
out	Scalar character. Name of the output file without extensions. If missing, it will be named like the input.
mode	Integer. Mode 1 converts to Plink binary format (.bed/.bim/.fam; default), while mode = 2 converts to Plink human-readable format (.ped/.map).
...	Could be "geno", "snp", or "ind", indicating the specific (full) names of the Eigensoft files. These arguments stand by the options "genotypename", "snpname", "indivname", respectivelly. Also, "familynames" could specified as "YES" or "NO" (default set to YES; only appliable when mode = 1).

Value

Genotype data in Plink format.

Author(s)

Cainã Max Couto-Silva

cmcouto-silva/gt documentation built on June 6, 2021, 7:14 p.m.