plink2eigensoft: Conversion from Plink to Eigenstrat format

In cmcouto-silva/gt: Facilities for essential tasks in R

Description

Conversion from Plink to Eigenstrat format

Usage

plink2eigensoft(input, out, mode = 1L)

Arguments

input	Scalar character. Name of the file in Plink format without extensions.
out	Scalar character. Name of the output file without extensions. If missing, it will be named like the input.
mode	Integer. Mode 1 considers input data as in binary format (.bed/.bim/.fam; default), while mode = 2 considers the Plink human-readable format (.ped/.map).

Details

Important note: This function assumes there's no ":" (colon) in the family names and individual IDs. Also, if all phenotypes are missing (6th column of .ped/.map file), then all individuals will be considered. Otherwise only individuals with phenotype info will be taken.

Value

Genotypic data in Engeinstrat format.

Author(s)

Cainã Max Couto-Silva

cmcouto-silva/gt documentation built on June 6, 2021, 7:14 p.m.