get_snp_genes: Get Gene info from SNP ID
In cmcouto-silva/gt: Facilities for essential tasks in R
Description
Usage
Arguments
Value
Author(s)
View source: R/get_snp_genes.R
Description
Parse gene IDs from list of SNP IDs (rs IDs). Annotation file is required!
Usage
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get_snp_genes(
snp,
ref = "~/cmcouto.silva@usp.br/lab_files/all_datasets/Reference_annotation",
include = NULL
)
Arguments
snp
Character. Vector with rs IDs.
ref
Scalar character. Path to file with SNP and gene info (table with "SNP" and "GENE" columns).
Value
Character vector with gene IDs.
Author(s)
Cainã Max Couto-Silva
cmcouto-silva/gt documentation built on June 6, 2021, 7:14 p.m.
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Description Usage Arguments Value Author(s)
View source: R/get_snp_genes.R
Description
Parse gene IDs from list of SNP IDs (rs IDs). Annotation file is required!
Usage
1 2 3 4 5 | get_snp_genes(
snp,
ref = "~/cmcouto.silva@usp.br/lab_files/all_datasets/Reference_annotation",
include = NULL
)
|
Arguments
snp |
Character. Vector with rs IDs. |
ref |
Scalar character. Path to file with SNP and gene info (table with "SNP" and "GENE" columns). |
Value
Character vector with gene IDs.
Author(s)
Cainã Max Couto-Silva
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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