shapeit_split: Split Shapeit files (.haps/.sample)

In cmcouto-silva/gt: Facilities for essential tasks in R

Description

Split a single dataset (.haps/.sample) by chromossome into multiple files.

Usage

shapeit_split(haps_file, output_dir, output_prefix)

Arguments

haps_file	Character. File name (with or without .haps extension).
output_dir	Character. Desired folder to outputs. Default set to the current folder.
output_prefix	Character. Desired name to output files after "chrX", where "X" stands by the chromosome ID. Default set to none.

Value

Multiple files from dataset splitted by chromosome unique IDs.

Author(s)

Cainã Max Couto da Silva

Examples

## Not run: 
dataset <- "merged.haps" # or just "merged" without .haps extension
split_haps(haps_file = dataset, output_dir = "splitted_files/", output_prefix = "_phased")

# Then, multiple files splitted by chromosomes will be created at the folder "splitted_files",
named "chrID_phased.EXT", where ID is the unique chromosome ID, and EXT is the correspoding extension (.haps/.sample)


## End(Not run)

cmcouto-silva/gt documentation built on June 6, 2021, 7:14 p.m.