detectGenes: Detects genes above minimum threshold.

Description Usage Arguments Value Examples

View source: R/utils.R

Description

Sets the global expression detection threshold to be used with this CellDataSet. Counts how many cells each feature in a CellDataSet object that are detectably expressed above a minimum threshold. Also counts the number of genes above this threshold are detectable in each cell.

Usage

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detectGenes(cds, min_expr = NULL)

Arguments

cds

the CellDataSet upon which to perform this operation

min_expr

the expression threshold

Value

an updated CellDataSet object

Examples

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## Not run: 
HSMM <- detectGenes(HSMM, min_expr=0.1)

## End(Not run)

cole-trapnell-lab/monocle-release documentation built on May 13, 2019, 8:50 p.m.