Description Usage Arguments Value Examples
View source: R/cds_conversion.R
This function takes a monocle CellDataSet and converts it to another type of object used in another popular single cell analysis toolkit. It currently supports Scran and Seurat packages.
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monocle_cds |
the Monocle CellDataSet you would like to export into a type used in another package |
export_to |
the object type you would like to export to, either Seurat or Scater |
export_all |
Whether or not to export all the slots in Monocle and keep in another object type. Default is FALSE (or only keep minimal dataset). If export_all is setted to be true, the original monocle cds will be keeped in the other cds object too. This argument is also only applicable when export_to is Seurat. |
a new object in the format of another package, as described in the export_to argument.
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