calibrate_per_cell_total_proposal: Calibrate_per_cell_total_proposal
In cole-trapnell-lab/monocle-release: Clustering, differential expression, and trajectory analysis for single- cell RNA-Seq
View source: R/normalization.R
Description
Calibrate_per_cell_total_proposal
Usage
1
2
calibrate_per_cell_total_proposal(relative_exprs_matrix, t_estimate,
expected_capture_rate, method = c("num_genes", "tpm_fraction"))
Arguments
relative_exprs_matrix
The matrix of relative TPM expression values
t_estimate
the TPM value that corresponds to 1 cDNA copy per cell
expected_capture_rate
The fraction of mRNAs captured as cDNAs
method
the formula to estimate the total mRNAs (num_genes corresponds to the second formula while tpm_fraction corresponds to the first formula, see the anouncement on Trapnell lab website for the Census paper)
cole-trapnell-lab/monocle-release documentation built on May 13, 2019, 8:50 p.m.
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View source: R/normalization.R
Description
Calibrate_per_cell_total_proposal
Usage
1 2 | calibrate_per_cell_total_proposal(relative_exprs_matrix, t_estimate,
expected_capture_rate, method = c("num_genes", "tpm_fraction"))
|
Arguments
relative_exprs_matrix |
The matrix of relative TPM expression values |
t_estimate |
the TPM value that corresponds to 1 cDNA copy per cell |
expected_capture_rate |
The fraction of mRNAs captured as cDNAs |
method |
the formula to estimate the total mRNAs (num_genes corresponds to the second formula while tpm_fraction corresponds to the first formula, see the anouncement on Trapnell lab website for the Census paper) |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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