estimateDispersionsForCellDataSet: Helper function to estimate dispersions
In cole-trapnell-lab/monocle-release: Clustering, differential expression, and trajectory analysis for single- cell RNA-Seq
Description
Helper function to estimate dispersions
Usage
1
2
estimateDispersionsForCellDataSet(cds, modelFormulaStr, relative_expr,
min_cells_detected, removeOutliers, verbose = FALSE)
Arguments
cds
a CellDataSet that contains all cells user wants evaluated
modelFormulaStr
a formula string specifying the model to fit for the genes.
relative_expr
Whether to transform expression into relative values
min_cells_detected
Only include genes detected above lowerDetectionLimit in at least this many cells in the dispersion calculation
removeOutliers
a boolean it determines whether or not outliers from the data should be removed
verbose
Whether to show detailed running information.
cole-trapnell-lab/monocle-release documentation built on May 13, 2019, 8:50 p.m.
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Description
Helper function to estimate dispersions
Usage
1 2 | estimateDispersionsForCellDataSet(cds, modelFormulaStr, relative_expr,
min_cells_detected, removeOutliers, verbose = FALSE)
|
Arguments
cds |
a CellDataSet that contains all cells user wants evaluated |
modelFormulaStr |
a formula string specifying the model to fit for the genes. |
relative_expr |
Whether to transform expression into relative values |
min_cells_detected |
Only include genes detected above lowerDetectionLimit in at least this many cells in the dispersion calculation |
removeOutliers |
a boolean it determines whether or not outliers from the data should be removed |
verbose |
Whether to show detailed running information. |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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