cellPairwiseDistances: Get the matrix of pairwise distances between cells

In cole-trapnell-lab/monocle-release: Clustering, differential expression, and trajectory analysis for single- cell RNA-Seq

Description

Retrieves a matrix capturing distances between each cell used during cell ordering.

Usage

cellPairwiseDistances(cds)

Arguments

cds	expression data matrix for an experiment

Value

A square, symmetric matrix containing the distances between each cell in the reduced-dimensionality space.

Examples

## Not run: 
D <- cellPairwiseDistances(HSMM)

## End(Not run)

cole-trapnell-lab/monocle-release documentation built on May 13, 2019, 8:50 p.m.