minSpanningTree: Retrieves the minimum spanning tree generated by Monocle...
In cole-trapnell-lab/monocle-release: Clustering, differential expression, and trajectory analysis for single- cell RNA-Seq
Description
Usage
Arguments
Value
Examples
View source: R/methods-CellDataSet.R
Description
Retrieves the minimum spanning tree (MST) that Monocle constructs during orderCells().
This MST is mostly used in plot_spanning_tree to help assess the accuracy
of Monocle\'s ordering.
Usage
1
minSpanningTree(cds)
Arguments
cds
expression data matrix for an experiment
Value
An igraph object representing the CellDataSet's minimum spanning tree.
Examples
1
2
3
4
## Not run:
T <- minSpanningTree(HSMM)
## End(Not run)
cole-trapnell-lab/monocle-release documentation built on May 13, 2019, 8:50 p.m.
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Description Usage Arguments Value Examples
View source: R/methods-CellDataSet.R
Description
Retrieves the minimum spanning tree (MST) that Monocle constructs during orderCells(). This MST is mostly used in plot_spanning_tree to help assess the accuracy of Monocle\'s ordering.
Usage
1 | minSpanningTree(cds)
|
Arguments
cds |
expression data matrix for an experiment |
Value
An igraph object representing the CellDataSet's minimum spanning tree.
Examples
1 2 3 4 | ## Not run:
T <- minSpanningTree(HSMM)
## End(Not run)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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