plot_coexpression_matrix: Not sure we're ready to release this one quite yet: Plot the...

Description Usage Arguments Value

Description

Not sure we're ready to release this one quite yet: Plot the branch genes in pseduotime with separate branch curves

Usage

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plot_coexpression_matrix(cds, rowgenes, colgenes, relative_expr = TRUE,
  min_expr = NULL, cell_size = 0.85, label_by_short_name = TRUE,
  show_density = TRUE, round_expr = FALSE)

Arguments

cds

CellDataSet for the experiment

rowgenes

Gene ids or short names to be arrayed on the vertical axis.

colgenes

Gene ids or short names to be arrayed on the horizontal axis

relative_expr

Whether to transform expression into relative values

min_expr

The minimum level of expression to show in the plot

cell_size

A number how large the cells should be in the plot

label_by_short_name

a boolean that indicates whether cells should be labeled by their short name

show_density

a boolean that indicates whether a 2D density estimation should be shown in the plot

round_expr

a boolean that indicates whether cds_expr values should be rounded or not

Value

a ggplot2 plot object


cole-trapnell-lab/monocle-release documentation built on May 13, 2019, 8:50 p.m.