dot-filter_sce_genes_for_de: Subset a SingleCellExperiment for genes meeting expressivity...
In combiz/scFlow: A Single-Cell/Nuclei Analysis Toolkit
.filter_sce_genes_for_de R Documentation
Subset a SingleCellExperiment for genes meeting expressivity criteria
Description
This function is applied after the subsetting of a SCE (e.g. celltype).
It's useful to subset before differential expression analysis.
Usage
.filter_sce_genes_for_de(sce, min_counts = 1L, min_cells_pc = 0.1)
Arguments
sce
a SingleCellExperiment object
Value
sce a SingleCellExperiment object
See Also
Other differential gene expression:
.generate_model_from_vars(),
.perform_de_with_mast(),
.preprocess_sce_for_de(),
perform_de(),
pseudobulk_sce(),
report_de(),
volcano_plot()
combiz/scFlow documentation built on Feb. 25, 2024, 10:25 a.m.
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| .filter_sce_genes_for_de | R Documentation |
Subset a SingleCellExperiment for genes meeting expressivity criteria
Description
This function is applied after the subsetting of a SCE (e.g. celltype). It's useful to subset before differential expression analysis.
Usage
.filter_sce_genes_for_de(sce, min_counts = 1L, min_cells_pc = 0.1)
Arguments
sce |
a SingleCellExperiment object |
Value
sce a SingleCellExperiment object
See Also
Other differential gene expression:
.generate_model_from_vars(),
.perform_de_with_mast(),
.preprocess_sce_for_de(),
perform_de(),
pseudobulk_sce(),
report_de(),
volcano_plot()
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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