dot-map_celltypes_with_ewce: Map cluster celltypes with EWCE

In combiz/scFlow: A Single-Cell/Nuclei Analysis Toolkit

Map cluster celltypes with EWCE

Description

Maps cluster celltypes using EWCE

Usage

.map_celltypes_with_ewce(
  ctd,
  l_ctd,
  inputSpecies = "human",
  annotation_level = 1,
  ctd_species = "human",
  reps = 1000,
  num_markers = 50
)

Arguments

ctd	ctd for current expt
l_ctd	a list of reference ctd's
inputSpecies	species of ctd
annotation_level	level of annotation
ctd_species	species of l_ctd
reps	number pf repitions performed by EWCE boostrap

Value

sce a SingleCellExperiment object annotated with sample metadata

Author(s)

Nathan Skene / Combiz Khozoie

See Also

Other clustering and dimensionality reduction: .get_x_most_specific_genes(), .map_celltypes(), cluster_sce(), map_custom_celltypes(), reduce_dims_sce()

combiz/scFlow documentation built on Feb. 25, 2024, 10:25 a.m.