.map_celltypes | R Documentation |
Main mapping function
.map_celltypes(
ctdToMap,
ctdToMapAgainst,
inputSpecies = "human",
mapAgainstSpecies = "human",
annotLevel = 1,
numTopMarkers = 50,
mappingLevel = 2,
reps = 1000
)
ctdToMap |
ctd for current expt |
ctdToMapAgainst |
the ctd to map against |
inputSpecies |
"human" or "mouse" |
mapAgainstSpecies |
"human" or "mouse" |
annotLevel |
level of annotation |
numTopMarkers |
number of top markers to consider |
mappingLevel |
level of mapping |
sce a SingleCellExperiment object annotated with sample metadata
Nathan Skene / Combiz Khozoie
Other clustering and dimensionality reduction:
.get_x_most_specific_genes()
,
.map_celltypes_with_ewce()
,
cluster_sce()
,
map_custom_celltypes()
,
reduce_dims_sce()
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