Files in combiz/scFlow

A Single-Cell/Nuclei Analysis Toolkit

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DESCRIPTION

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LICENSE

LICENSE.md

NAMESPACE

NEWS.md R/annotate_celltype_metrics.R R/annotate_integrated_sce.R R/annotate_merged_sce.R R/annotate_sce.R R/annotate_sce_cells.R R/annotate_sce_genes.R R/citations.R R/cluster_sce.R R/diffexp_models.R R/filter_sce.R R/find_cells_sce.R R/find_impacted_pathways.R R/find_marker_genes.R R/find_singlets.R R/generate_sce.R R/generic_helper_functions.R R/integrate_sce.R R/liger_preprocess.R R/liger_reduce_dims.R R/map_custom_celltypes.R R/map_ensembl_gene_id.R R/map_with_ewce.R R/merge_sce.R R/model_celltype_freqs.R R/pathway_analysis_enrichr.R R/pathway_analysis_webgestaltr.R R/plot_expr_by_numeric_var.r R/plot_reduced_dim.R R/plot_reduced_dim_gene.R R/plot_violin.R R/pseudobulk_sce.R R/read_celltype_mappings.R R/read_metadata.R R/read_sce.R R/read_sparse_matrix.R R/reduce_dims_sce.R R/report_celltype_metrics.R R/report_celltype_model.R R/report_de.R R/report_impacted_pathway.R R/report_integrated_sce.R R/report_merged_sce.R R/report_qc_sce.R R/run_doubletfinder.R R/sce_to_cds.R R/sce_to_seurat.R R/volcano_plot.R R/write_celltype_mappings.R R/write_sce.R R/write_sparse_matrix.R README.Rmd README.md

_pkgdown.yml

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codecov.yml

data-raw/DATASET.R

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scFlow.Rproj

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combiz/scFlow documentation built on Feb. 25, 2024, 10:25 a.m.