volcano_plot: Plot volcano plot for differential expression analysis

In combiz/scFlow: A Single-Cell/Nuclei Analysis Toolkit

Plot volcano plot for differential expression analysis

Description

Plot volcano plot for differential expression analysis

Usage

volcano_plot(dt, logFC_threshold = 0.25, padj_cutoff = 0.05, n_label = 5)

Arguments

dt	Differential expression result table from perform_de() function.
logFC_threshold	Fold change threshold for the volcano plot. This will be adjusted and plotted as the log2 fold change. Default is 0.25.
padj_cutoff	The adjusted p-value cut-off for the volcano plot. Default is 0.05.
n_label	The number of top up & down differentially expressed genes to be labeled. Default is 5.

Value

No return. The plot is printed out.

See Also

Other differential gene expression: .filter_sce_genes_for_de(), .generate_model_from_vars(), .perform_de_with_mast(), .preprocess_sce_for_de(), perform_de(), pseudobulk_sce(), report_de()

combiz/scFlow documentation built on Feb. 25, 2024, 10:25 a.m.