dot-model_fisher_celltype: Run a fisher exact test on absolute cell numbers for each...

In combiz/scFlow: A Single-Cell/Nuclei Analysis Toolkit

Run a fisher exact test on absolute cell numbers for each celltype

Description

Run a fisher exact test on absolute cell numbers for each celltype

Usage

.model_fisher_celltype(counts_df, dependent_var, celltype_var, ref_class, ...)

Arguments

counts_df	absolute cell number counts stratified
dependent_var	the name of the colData variable for contrasts
celltype_var	the colData variable specifying celltype or subtype
ref_class	the class of dependent_var used as reference

Value

df a data frame of cell numbers with fisher p values adjusted

See Also

Other helper: .append_cell_metric_plots_sce(), .append_cell_prop_plots_sce(), .clean_ggplot_plot_env(), .clean_ggplot_quosures(), .clean_quosure_env(), .fancy_scientific(), .get_d_palette(), .grobify_ggplot(), .plot_dirichlet_results(), .plot_unique_id_var(), .prepare_dirichlet_plot_table(), .prepare_fisher_counts_table(), .prepare_unique_id_var_plot_table(), .process_dirichlet_fit(), .retrieve_covariates(), .tally_cells(), .uniftest()

combiz/scFlow documentation built on Feb. 25, 2024, 10:25 a.m.