write_sce: Write a SingleCellExperiment to a folder

In combiz/scFlow: A Single-Cell/Nuclei Analysis Toolkit

Write a SingleCellExperiment to a folder

Description

Write a SingleCellExperiment into a folder: -

• Feature-barcode-matrix files: -

  • 'barcodes.tsv.gz'

  • 'features.tsv.gz'

  • 'matrix.mtx.gz'

• Metadata: -

  • sce_rowdata.tsv

  • sce_coldata.tsv

  • scecoldata_classes.tsv

• reducedDim(sce, x) (if present): -

  • ReducedDim_x.tsv

Usage

write_sce(sce, folder_path, write_metadata = FALSE, overwrite = TRUE)

Arguments

sce	a SingleCellExperiment Object
folder_path	path to save the SingleCellExperiment
write_metadata	Enable writing metadata.
overwrite	delete the existing directory and overwrite if TRUE

See Also

Other import and export functions: read_celltype_mappings(), read_sce(), read_sparse_matrix(), write_celltype_mappings(), write_sparse_matrix()

combiz/scFlow documentation built on Feb. 25, 2024, 10:25 a.m.