Nuclei Analysis Toolkit

generate_sce

R Documentation

Generate a SingleCellExperiment object from a matrix and metadata

Description

Generate a SingleCellExperiment with a sparse matrix and a one-row dataframe containing metadata for the sample.

Usage

generate_sce(mat, metadata)

Arguments

`mat`	a sparse feature-barcode matrix
`metadata`	a single row dataframe with sample metadata

Value

sce a SingleCellExperiment object annotated with sample metadata

Other annotation functions: .preprocess_seurat_object(), annotate_celltype_metrics(), annotate_integrated_sce(), annotate_merged_sce(), annotate_sce(), annotate_sce_cells(), annotate_sce_genes(), filter_sce(), find_cells(), find_singlets(), map_ensembl_gene_id(), merge_sce(), read_metadata(), report_celltype_metrics(), report_celltype_model(), report_merged_sce(), report_qc_sce(), run_doubletfinder(), sce_to_seu()