report_integrated_sce: Generate a report for dataset integration, dims reduction,...

In combiz/scFlow: A Single-Cell/Nuclei Analysis Toolkit

Generate a report for dataset integration, dims reduction, and clustering

Description

Generate a report for dataset integration, dims reduction, and clustering

Usage

report_integrated_sce(
  sce,
  report_folder_path = getwd(),
  report_file = "integrate_scFlow",
  categorical_covariates = list()
)

Arguments

sce	a SingleCellExperiment object
report_folder_path	folder path to save the report
report_file	filename for report (without an extension)
categorical_covariates	list of categorical variables

Value

sce SingleCellExperiment object annotated with reducedDims

See Also

Other Data integration: integrate_sce(), liger_preprocess(), liger_reduce_dims()

combiz/scFlow documentation built on Feb. 25, 2024, 10:25 a.m.