View source: R/report_celltype_metrics.R
report_celltype_metrics | R Documentation |
Generate A Report of Cell-Type Metrics for a SingleCellExperiment
report_celltype_metrics(
sce,
report_folder_path = getwd(),
report_file = "celltype_metrics_scflow"
)
sce |
a SingleCellExperiment object |
report_folder_path |
folder path to save the report |
report_file |
filename for report (without an extension) |
sce a annotated SingleCellExperiment object
Other annotation functions:
.preprocess_seurat_object()
,
annotate_celltype_metrics()
,
annotate_integrated_sce()
,
annotate_merged_sce()
,
annotate_sce()
,
annotate_sce_cells()
,
annotate_sce_genes()
,
filter_sce()
,
find_cells()
,
find_singlets()
,
generate_sce()
,
map_ensembl_gene_id()
,
merge_sce()
,
read_metadata()
,
report_celltype_model()
,
report_merged_sce()
,
report_qc_sce()
,
run_doubletfinder()
,
sce_to_seu()
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