report_merged_sce: Generate plots and a QC report for a SingleCellExperiment

In combiz/scFlow: A Single-Cell/Nuclei Analysis Toolkit

Generate plots and a QC report for a SingleCellExperiment

Description

Generate plots and a QC report for a SingleCellExperiment

Usage

report_merged_sce(
  sce,
  report_folder_path = getwd(),
  report_file = "merged_report_scflow"
)

Arguments

sce	a SingleCellExperiment object
report_folder_path	folder path to save the report
report_file	filename for report (without an extension)

Value

sce a annotated SingleCellExperiment object

See Also

Other annotation functions: .preprocess_seurat_object(), annotate_celltype_metrics(), annotate_integrated_sce(), annotate_merged_sce(), annotate_sce(), annotate_sce_cells(), annotate_sce_genes(), filter_sce(), find_cells(), find_singlets(), generate_sce(), map_ensembl_gene_id(), merge_sce(), read_metadata(), report_celltype_metrics(), report_celltype_model(), report_qc_sce(), run_doubletfinder(), sce_to_seu()

combiz/scFlow documentation built on Feb. 25, 2024, 10:25 a.m.