read_metadata: Read the metadata for a sample from a samplesheet

In combiz/scFlow: A Single-Cell/Nuclei Analysis Toolkit

Read the metadata for a sample from a samplesheet

Description

Retrieves a single row from a samplesheet table where the provided unique_key parameter is matched in the key_colname column of the samplesheet.

Usage

read_metadata(unique_key, key_colname, samplesheet_path, ...)

Arguments

unique_key	unique value for this sample in the key_colname column
key_colname	the column name containing the unique_key
samplesheet_path	path to a tsv file containing a samplesheet
...	for col_classes (may be extended later - fix)

Value

metadata the metadata for the specified sample#'

See Also

Other annotation functions: .preprocess_seurat_object(), annotate_celltype_metrics(), annotate_integrated_sce(), annotate_merged_sce(), annotate_sce(), annotate_sce_cells(), annotate_sce_genes(), filter_sce(), find_cells(), find_singlets(), generate_sce(), map_ensembl_gene_id(), merge_sce(), report_celltype_metrics(), report_celltype_model(), report_merged_sce(), report_qc_sce(), run_doubletfinder(), sce_to_seu()

combiz/scFlow documentation built on Feb. 25, 2024, 10:25 a.m.