pathway_analysis_enrichr: Functional enrichment analysis using enrichR

In combiz/scFlow: A Single-Cell/Nuclei Analysis Toolkit

Functional enrichment analysis using enrichR

Description

Performs impacted pathway analysis with a list of genes.

Usage

pathway_analysis_enrichr(
  gene_file = NULL,
  enrichment_database = c("GO_Molecular_Function_2021", "GO_Cellular_Component_2021",
    "GO_Biological_Process_2021", "KEGG_2021_Human", "WikiPathways_2021_Human",
    "Reactome_2022")
)

Arguments

gene_file	A data frame containing a list of significant genes with column name gene or a vector of significant genes.
enrichment_database	Name of the database for enrichment. User can specify one or more database names from enrichR::listEnrichrDbs().

Value

enrichment_result a list of data.frames containing enrichment output and a list of plots of top 10 significant genesets.

See Also

Other Impacted pathway analysis: find_impacted_pathways(), list_databases(), pathway_analysis_webgestaltr(), report_impacted_pathway()

combiz/scFlow documentation built on Feb. 25, 2024, 10:25 a.m.