find_singlets: Find singlets in a SingleCellExperiment

In combiz/scFlow: A Single-Cell/Nuclei Analysis Toolkit

Find singlets in a SingleCellExperiment

Description

Runs a doublet/multiplet identification algorithm on the SingleCellExperiment and returns a SingleCellExperiment annotated with is_singlet and, depending on the algorithm, additional annotations / dimensionality reductions.

Usage

find_singlets(sce, singlet_find_method, ...)

Arguments

sce	a SingleCellExperiment object
singlet_find_method	the method to use for identifying singlets
...	additional parameters passed to singlet finding algorithm.

Value

sce a SingleCellExperiment object annotated for singlets

See Also

Other annotation functions: .preprocess_seurat_object(), annotate_celltype_metrics(), annotate_integrated_sce(), annotate_merged_sce(), annotate_sce(), annotate_sce_cells(), annotate_sce_genes(), filter_sce(), find_cells(), generate_sce(), map_ensembl_gene_id(), merge_sce(), read_metadata(), report_celltype_metrics(), report_celltype_model(), report_merged_sce(), report_qc_sce(), run_doubletfinder(), sce_to_seu()

combiz/scFlow documentation built on Feb. 25, 2024, 10:25 a.m.