read_sce: Read a SingleCellExperiment from a folder

In combiz/scFlow: A Single-Cell/Nuclei Analysis Toolkit

Read a SingleCellExperiment from a folder

Description

Read a SingleCellExperiment from a folder: -

• Feature-barcode-matrix files: -

  • 'barcodes.tsv.gz'

  • 'features.tsv.gz'

  • 'matrix.mtx.gz'

• Metadata: -

  • 'sce_rowdata.tsv'

  • 'sce_coldata.tsv'

  • 'scecoldata_classes.tsv'

• reducedDim(sce, x) (if present): -

  • 'ReducedDim_x.tsv'

Usage

read_sce(folder_path, read_metadata = FALSE)

Arguments

folder_path	path to save the SingleCellExperiment
read_metadata	Enable import of metadata if previously saved.

Value

sce a SingleCellExperiment object

See Also

Other import and export functions: read_celltype_mappings(), read_sparse_matrix(), write_celltype_mappings(), write_sce(), write_sparse_matrix()

combiz/scFlow documentation built on Feb. 25, 2024, 10:25 a.m.