adaptative_threshold_otu | Relevel taxa/OTU to 0 according to a taxa/OTU wise threshold. |
ctrl_samples_stats | Generate taxa/OTU statistics to compare control samples with... |
get_taxa_nomy | Taxa/OTU abundance in a given sample coupled with rank and... |
id2hash | Convert taxa/ID through a correspondence table |
multiple_rrarefy | Performs rarefying multiple times and returns averaged OTU... |
plot_krona | Interactive Taxonomy plot with Krona from a phyloseq object |
plot_mv | Plot Mean Variance OTU in order to evaluate overdispersion |
plot_pie | Pie Plot Taxonomy Assignations from Phyloseq |
plot_pie_vector | Pie Plot Taxonomy Assignations from Two Abundance Vector |
plot_pie_with_legend | Plot Taxonomy Assignations from Phyloseq with legend. |
plot_sparsity | Plot taxa/OTU table to evaluate sparsity. |
plot_violin | Violin distribution plot |
relative_abd_without_specific_sample | Compute taxa/OTU abundance relative to the total dataset |
relative_abundance | Compute taxa/OTU abundance relative to the total dataset |
rename_otu | OTU renaming: from hash to rank abundance prefix |
sample_prev | Taxa/OTU number in all samples |
sample_stats | Apply statistics function to samples. |
subset_samples_no_zero | Subset samples and prune taxa/OTU with zero abundance |
taxa_prev | OTU/Species prevalence in all samples |
taxa_stats | Apply statistics function to taxa abundance vector |
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