adaptative_threshold_otu: Relevel taxa/OTU to 0 according to a taxa/OTU wise threshold.
In cpauvert/psadd: Additions to phyloseq package for microbiome analysis
Description
Usage
Arguments
Value
References
View source: R/transform_functions.R
Description
Relevel taxa/OTU to 0 according to a taxa/OTU wise threshold.
Usage
1
adaptative_threshold_otu(physeq, otuThreshold)
Arguments
physeq
otu_table-class, or phyloseq-class
otuThreshold
A numeric-class of length equal to the number of taxa/OTU.
If the latter is zero, the corresponding taxa/OTU will not be relevel.
Value
An object of class phyloseq.
Only the otu_table-class component is modified.
References
This procedure is described in Galan et al. (2016).
cpauvert/psadd documentation built on Nov. 22, 2020, 9:19 a.m.
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Description Usage Arguments Value References
View source: R/transform_functions.R
Description
Relevel taxa/OTU to 0 according to a taxa/OTU wise threshold.
Usage
1 | adaptative_threshold_otu(physeq, otuThreshold)
|
Arguments
physeq |
|
otuThreshold |
A |
Value
An object of class phyloseq.
Only the otu_table-class component is modified.
References
This procedure is described in Galan et al. (2016).
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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