taxa_prev: OTU/Species prevalence in all samples
In cpauvert/psadd: Additions to phyloseq package for microbiome analysis
Description
Usage
Arguments
Value
See Also
Examples
Description
Return a named vector of taxa/OTU with the number of samples where
their abundance was not null.
Usage
1
taxa_prev(physeq)
Arguments
physeq
otu_table-class, or phyloseq-class
Value
A numeric-class with length equal to the number of species
in the table, name indicated the taxa ID, and value equal to the species prevalence
in every samples where it occurs.
See Also
taxa_sums on which this function is based.
sample_prev for a similar output on samples.
Examples
1
2
3
cpauvert/psadd documentation built on Nov. 22, 2020, 9:19 a.m.
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Description Usage Arguments Value See Also Examples
Description
Return a named vector of taxa/OTU with the number of samples where their abundance was not null.
Usage
1 | taxa_prev(physeq)
|
Arguments
physeq |
|
Value
A numeric-class with length equal to the number of species
in the table, name indicated the taxa ID, and value equal to the species prevalence
in every samples where it occurs.
See Also
taxa_sums on which this function is based.
sample_prev for a similar output on samples.
Examples
1 2 3 |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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