taxa_stats: Apply statistics function to taxa abundance vector
In cpauvert/psadd: Additions to phyloseq package for microbiome analysis
Description
Usage
Arguments
Value
See Also
Examples
Description
It generalize the taxa_sums function and enable the use of several summary functions.
Usage
1
taxa_stats(physeq, ...)
Arguments
physeq
otu_table-class, or phyloseq-class
...
The function to be applied to the OTU table
Value
A numeric-class with length equal to the number of species
in the table, name indicated the taxa ID, and value equal to the result of
the function applied through the passed expression (...).
See Also
taxa_sums on which this function is based.
Examples
1
2
3
4
require(phyloseq)
data(esophagus)
taxa_stats(esophagus, mean)[1:6]
taxa_stats(esophagus, var)[1:6]
cpauvert/psadd documentation built on Nov. 22, 2020, 9:19 a.m.
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Description Usage Arguments Value See Also Examples
Description
It generalize the taxa_sums function and enable the use of several summary functions.
Usage
1 | taxa_stats(physeq, ...)
|
Arguments
physeq |
|
... |
The function to be applied to the OTU table |
Value
A numeric-class with length equal to the number of species
in the table, name indicated the taxa ID, and value equal to the result of
the function applied through the passed expression (...).
See Also
taxa_sums on which this function is based.
Examples
1 2 3 4 | require(phyloseq)
data(esophagus)
taxa_stats(esophagus, mean)[1:6]
taxa_stats(esophagus, var)[1:6]
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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