relative_abundance: Compute taxa/OTU abundance relative to the total dataset
In cpauvert/psadd: Additions to phyloseq package for microbiome analysis
Description
Usage
Arguments
Value
See Also
Description
Convenience function to divide taxa_sums output vector by the
total number of sequences.
Usage
1
relative_abundance(physeq)
Arguments
physeq
otu_table-class, or phyloseq-class
Value
A numeric-class with length equal to the number of species
in the table, name indicated the taxa ID, and value equal to the taxa/OTU
relative abundance
See Also
taxa_sums on which this function is based.
See ctrl_samples_stats for a usage example.
cpauvert/psadd documentation built on Nov. 22, 2020, 9:19 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value See Also
Description
Convenience function to divide taxa_sums output vector by the
total number of sequences.
Usage
1 | relative_abundance(physeq)
|
Arguments
physeq |
|
Value
A numeric-class with length equal to the number of species
in the table, name indicated the taxa ID, and value equal to the taxa/OTU
relative abundance
See Also
taxa_sums on which this function is based.
See ctrl_samples_stats for a usage example.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.