plot_pie_vector: Pie Plot Taxonomy Assignations from Two Abundance Vector

In cpauvert/psadd: Additions to phyloseq package for microbiome analysis

Description

Displays an overlay of two pie chart: (i) inner and (ii) outer. It was primarily developed to illustrate taxonomic assignations at both levels at the same time (e.g. Phylum and Class)

Usage

plot_pie_vector(inner_abd, outer_abd, title, COL.TAXO = COL.TAXO, EDG = 200)

Arguments

inner_abd	A numeric-class describing the inner pie chart
outer_abd	A numeric-class describing the outer pie chart
title	A character specifying the plot title
COL.TAXO	A palette (list) containing (at least) two named elements
EDG	Number of edges

Details

COL.TAXO should contain at least two named elements DIV and CLASS. These vectors describe the inner and outer pie chart color, respectively.

Value

Nothing

Author(s)

Thomas Fort

References

See Fort et al. (2016) in PeerJ.

See Also

floating.pie (in plotrix package)

cpauvert/psadd documentation built on Nov. 22, 2020, 9:19 a.m.