Description Usage Arguments Value See Also
View source: R/convenience_functions.R
Taxa/OTU abundance in a given sample coupled with rank and taxonomic information
1 | get_taxa_nomy(physeq, smp, level = "Species")
|
physeq |
|
smp |
A single sample of interest. This integer or sample name will be
passed to |
level |
A character indicating the taxonomic rank of interest. Should be in
|
An abundance sorted data.frame
with the following components
Sample
Sample of interest
Abundance
Taxa/OTU abundance in the sample of interest
Rank
Taxa/OTU rank in the dataset. The higher the rank, the less abundant the OTU.
level
Taxonomic rank of interest. Note that the column is named after
the provided value from level
.
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