Description Usage Arguments Value See Also
View source: R/convenience_functions.R
Taxa/OTU abundance in a given sample coupled with rank and taxonomic information
1 | get_taxa_nomy(physeq, smp, level = "Species")
|
physeq |
|
smp |
A single sample of interest. This integer or sample name will be
passed to |
level |
A character indicating the taxonomic rank of interest. Should be in
|
An abundance sorted data.frame with the following components
SampleSample of interest
AbundanceTaxa/OTU abundance in the sample of interest
RankTaxa/OTU rank in the dataset. The higher the rank, the less abundant the OTU.
levelTaxonomic rank of interest. Note that the column is named after
the provided value from level.
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