plot_krona: Interactive Taxonomy plot with Krona from a phyloseq object
In cpauvert/psadd: Additions to phyloseq package for microbiome analysis

Description Usage Arguments References Examples

Construct and run a Krona Chart to compare taxonomic assignations between different conditions.

1	plot_krona(physeq, output, variable, trim = F)

`physeq`	`phyloseq-class` with a `taxonomyTable-class`
`output`	A `character` stating the output filename for Krona Chart and the directory in which Krona files will be created.
`variable`	A `character` indicating which variable from sample data to use.
`trim`	Should spaces and brackets be converted to underscore automatically.

KronaTools.

## Not run: 
require(phyloseq)
data(GlobalPatterns)
plot_krona(GlobalPatterns,"GP-krona", "SampleType")# issues with brackets
plot_krona(GlobalPatterns,"GP-krona", "SampleType",trim=T)

## End(Not run)