plot_pie: Pie Plot Taxonomy Assignations from Phyloseq
In cpauvert/psadd: Additions to phyloseq package for microbiome analysis
Description
Usage
Arguments
Details
Value
Author(s)
References
See Also
View source: R/plot_functions.R
Description
Displays an overlay of two pie chart: (i) inner (e.g. Phylum)
and (ii) outer (e.g. Class)
Usage
1
Arguments
physeq
phyloseq-class with a sample_data-class
title.
A character specifying the plot title
condition
A character value of the "Description" column in sample_data-class
COL.TAXO.
COL.TAXO A palette (list) containing (at least) two named elements
Details
It was primarily developed to illustrate taxonomic assignations at both
levels at the same time.
Value
A list of two elements (inner and outer) containing taxa names.
Author(s)
Charlie PAUVERT
References
Adapted from Fort et al. (2016) in PeerJ.
See Also
cpauvert/psadd documentation built on Nov. 22, 2020, 9:19 a.m.
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Description Usage Arguments Details Value Author(s) References See Also
View source: R/plot_functions.R
Description
Displays an overlay of two pie chart: (i) inner (e.g. Phylum) and (ii) outer (e.g. Class)
Usage
1 |
Arguments
physeq |
|
title. |
A |
condition |
A |
COL.TAXO. |
COL.TAXO A palette ( |
Details
It was primarily developed to illustrate taxonomic assignations at both levels at the same time.
Value
A list of two elements (inner and outer) containing taxa names.
Author(s)
Charlie PAUVERT
References
Adapted from Fort et al. (2016) in PeerJ.
See Also
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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