assembleHaps: This will take sorted matrices and will calculate concordance...

In daewoooo/StrandPhaseR: Phase template strands from Strand-seq data

This will take sorted matrices and will calculate concordance of each single cell to the consensus haplotypes in order to assemble highly accurate haplotypes

Description

This will take sorted matrices and will calculate concordance of each single cell to the consensus haplotypes in order to assemble highly accurate haplotypes

Usage

assembleHaps(data.object, translateBases = FALSE, concordance = 0.9)

Arguments

data.object	containing sorted watson and crick haplotypes of each single cell
translateBases	translates integer coded bases (1,2,3,4) into letters (A,C,G,T)
concordance	Level of agreement between single cell and consensus haplotypes

Author(s)

David Porubsky

daewoooo/StrandPhaseR documentation built on April 7, 2024, 7:13 p.m.