Files in daewoooo/StrandPhaseR
Phase template strands from Strand-seq data
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
R/LOHseeker.R
R/StrandPhase.R
R/assembleHaps.R
R/bamregion2GRanges.R
R/calcQualMeasures.R
R/compareSingleCellHaps.R
R/correctInversionPhasing.R
R/export.R
R/exportConsensus.R
R/exportPhasedReads.R
R/fillGaps.R
R/genotypeStrandScells.R
R/loadMatrices.R
R/mapRecomb.R
R/phaseChromsome.R
R/plotting.R
R/rwConfig.R
R/sortMatrices.R
R/splitReads.R
R/utils-pipe.R
R/vcf2ranges.R
README.md
StrandPhaseR_logo.png
man/LOHseeker.Rd
man/assembleHaps.Rd
man/bamregion2GRanges.Rd
man/calcMatrixScore.Rd
man/compareSingleCellHaps.Rd
man/correctHetInv.Rd
man/correctHomInv.Rd
man/correctInvertedRegionPhasing.Rd
man/exportBedGraph.Rd
man/exportConsensus.Rd
man/exportPhasedReads.Rd
man/exportVCF.Rd
man/fillGapsWithBam.Rd
man/fillGapsWithVCF.Rd
man/findRecomb.Rd
man/genotypeStrandScells.Rd
man/loadGRangesFromFiles.Rd
man/loadMatrices.Rd
man/mapRecomb.Rd
man/phaseChromosome.Rd
man/phaseHETinversion.Rd
man/pipe.Rd
man/plotHapDensity.Rd
man/plotHaploSegs.Rd
man/plotPhasedReads.Rd
man/plotSingleCellHaps.Rd
man/readConfig.Rd
man/sliceRanges.Rd
man/sortMatrices.Rd
man/splitReads.Rd
man/strandPhaseR.Rd
man/vcf2ranges.Rd
man/vcf2vranges.Rd
man/writeConfig.Rd
