compareSingleCellHaps: This will take sorted matrices and will calculate concordance...
In daewoooo/StrandPhaseR: Phase template strands from Strand-seq data

compareSingleCellHaps

R Documentation

This will take sorted matrices and will calculate concordance of each single cell to the consensus haplotypes in order to assemble highly accurate haplotypes

Description

This will take sorted matrices and will calculate concordance of each single cell to the consensus haplotypes in order to assemble highly accurate haplotypes

Usage

compareSingleCellHaps(
  consensusHaps = NULL,
  sortedHaps = NULL,
  bin.size = 10,
  step = 1
)

Arguments

`consensusHaps`	A `list` returned by function `assembleHaps`
`sortedHaps`	A `list` returned by function `sortMatrices`
`bin.size`	A size of the window measured in number of SNV to scan single cell haplotypes.
`step`	A step (number of SNVs) to move the window.